SNP Profiles matching NA 168

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 Key

 1234567891011121314
_Input profile
CCAGCCTTCTAATTGTCTCCAAGGCCAA
1._NA_168
CCAGCCTTCTAATTGTCTCCAAGGCCAA
2._GC-01-112-6-09
CCAGCCTTCTAATTGTCTCCAAGGCCAA
3._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
4._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
5._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
6._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
7._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
8._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
9._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
10._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
11._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
12._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
13._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
14._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
15._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
16._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
17._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._POUND_19_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
27._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
28._GC-01-040-2-17
CCAGCCTTCTAATTGTCTCCAAGGCCAA
29._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
30._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
31._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
32._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
33._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
34._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
35._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
36._GC-01-007-1-07
CCAGCCTTCTAATTGTCTCCAAGGCCAA
37._POUND_19_/A
CCAG_TTCTAATTGTCTCCAAGGCCAA
38._GC-01-040-2-17
CCAG_TTCTAATTGTCTCCAAGGCCAA
39._NA_168
CCAGCCTTCTAATTGTCTCCAAGGCCAA
40._GC-01-112-6-09
CCAGCCTTCTAATTGTCTCCAAGGCCAA
41._RUQ_27
CCAGCCTTCTAATTGTCTCCAAGGCCAA
42._POUND_19_/A
CCAGCCTTCTAATTGTCTCCAAGGCCAA
43._RUQ_27
_AGCCTT___GT____CCAA
 1516171819202122232425262728
_Input profile
CTAAGGCTCTCGGGAACCACGGGTCTCC
1._NA_168
CTAAGGCTCTCGGGAACCACGGGTCTCC
2._GC-01-112-6-09
CTAAGGCTCTCGGGAACCACGGGTCTCC
3._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
4._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
5._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
6._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
7._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
8._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
9._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
10._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
11._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
12._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
13._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
14._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
15._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
16._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
17._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
18._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
19._POUND_19_/B
CTAAGGCTCTCGGGAACCACGGGTCTCC
20._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
21._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
22._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
23._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
24._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
25._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
26._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
27._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
28._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
29._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
30._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
31._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
32._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
33._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
34._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
35._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
36._GC-01-007-1-07
CTAAGGCTCTCGGGAACCACGGGTCTCC
37._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
38._GC-01-040-2-17
CTAAGGCTCTCGGGAACCACGGGTCTCC
39._NA_168
CTAAGGCTCTCGGGAACCACGGGTCTCC
40._GC-01-112-6-09
CTAAGGCTCTCGGGAACCACGGGTCTCC
41._RUQ_27
CTAAGGCTCTCGGGAACCACGGGTCTCC
42._POUND_19_/A
CTAAGGCTCTCGGGAACCACGGGTCTCC
43._RUQ_27
____TTCGGG_CCACCGGTCTCC
 293031323334353637383940  
_Input profile
AGGGAACCAAGGAACTGGACATGGX_XX_X
1._NA_168
AGGGAACCAAGGAACTGGACATGGX_XX_X
2._GC-01-112-6-09
AGGGAACCAAGGAACTGGACATGGX_XX_X
3._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
4._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
5._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
6._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
7._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
8._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
9._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
10._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
11._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
12._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
13._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
14._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
15._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
16._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
17._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
18._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
19._POUND_19_/B
AGGGAACCAAGGAACTGGACATGGX_XX_X
20._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
21._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
22._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
23._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
24._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
25._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
26._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
27._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
28._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
29._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
30._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
31._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
32._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
33._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
34._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
35._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
36._GC-01-007-1-07
AGGGAACCAAGGAACTGGACATGGX_XX_X
37._POUND_19_/A
AGGGAACCAAGGAACTGGACATGGX_XX_X
38._GC-01-040-2-17
AGGGAACCAAGGAACTGGACATGGX_XX_X
39._NA_168
AGGGAACCAA_AA_GGACATGGX_XX_X
40._GC-01-112-6-09
AGGGAACCAA_AA_GGACATGGX_XX_X
41._RUQ_27
AGGGAACCAAGGACCTGGACATGGX_XX_X
42._POUND_19_/A
AGGGAACCAAGGACCTGGACATGGX_XX_X
43._RUQ_27
AG_AACCAAGGACCTGGAC__X_XX_X

Input profile: NA_168

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 435
 Dapeng Zhang, 2016

1._NA_168

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1609 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._NA_168 GC-01-112-6-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 3
 Dapeng Zhang, 2016

5._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 9
 Dapeng Zhang, 2016

6._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 10
 Dapeng Zhang, 2016

7._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 11
 Dapeng Zhang, 2016

8._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 13
 Dapeng Zhang, 2016

9._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 16
 Dapeng Zhang, 2016

10._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 12 > F
 Dapeng Zhang, 2016

11._POUND_19_/A

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 6 > FP
 Dapeng Zhang, 2016

12._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 2
 Dapeng Zhang, 2016

13._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 7
 Dapeng Zhang, 2016

14._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 9
 Dapeng Zhang, 2016

15._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 14
 Dapeng Zhang, 2016

16._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 15
 Dapeng Zhang, 2016

17._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 1 > FP
 Dapeng Zhang, 2016

18._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 11 > F
 Dapeng Zhang, 2016

19._POUND_19_/B

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1105 8 > FP
 Dapeng Zhang, 2016

20._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

23._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

26._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

27._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

28._POUND_19_/A GC-01-040-2-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

29._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

32._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

33._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

34._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

35._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

36._POUND_19_/B GC-01-007-1-07

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

37._POUND_19_/A

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1213 5
 Dapeng Zhang, 2016

38._POUND_19_/A GC-01-040-2-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

39._NA_168

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1609 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

40._NA_168 GC-01-112-6-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

41._POUND_19_/A RUQ_27

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

42._POUND_19_/A

98.8 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
 Dapeng Zhang, 2016

43._POUND_19_/A RUQ_27

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25